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rbr rubrerythrin [ Methanohalophilus mahii DSM 5219 ]

Gene ID: 8982197, updated on 22-Oct-2024

Summary

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Gene symbol
rbr
Gene description
rubrerythrin
Locus tag
MMAH_RS00315
Gene type
protein coding
Organism
Methanohalophilus mahii DSM 5219 (strain: DSM 5219, culture-collection: DSM:5219, ATCC 35705, OCM 68, type-material: type strain of Methanohalophilus mahii)
Lineage
Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalophilus
Old locus tag
Mmah_0066
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Genomic context

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Sequence:
NC_014002.1 (69754..70338)

NC_014002.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene NDP-glucose dehydratase epimerase Neighboring gene SIMPL domain-containing protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_014002.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Role of rubrerythrin in the oxidative stress response of Porphyromonas gingivalis. Sztukowska M, et al. Mol Microbiol, 2002 Apr. PMID 11972784
  2. Rubrerythrin from Clostridium perfringens: cloning of the gene, purification of the protein, and characterization of its superoxide dismutase function. Lehmann Y, et al. J Bacteriol, 1996 Dec. PMID 8955396, Free PMC Article
  3. Isolation and characterization of rubrerythrin, a non-heme iron protein from Desulfovibrio vulgaris that contains rubredoxin centers and a hemerythrin-like binuclear iron cluster. LeGall J, et al. Biochemistry, 1988 Mar 8. PMID 2835096
  4. Pathway for H2O2 and O2 detoxification in Clostridium acetobutylicum. Riebe O, et al. Microbiology (Reading), 2009 Jan. PMID 19118342, Free PMC Article
  5. The structure of Desulfovibrio vulgaris rubrerythrin reveals a unique combination of rubredoxin-like FeS4 and ferritin-like diiron domains. deMaré F, et al. Nat Struct Biol, 1996 Jun. PMID 8646540

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
rubrerythrin
WP_013036546.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_014002.1 Reference assembly

    Range
    69754..70338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_013036546.1 rubrerythrin [Methanohalophilus mahii]

    See identical proteins and their annotated locations for WP_013036546.1

    UniProtKB/TrEMBL
    D5E8U4
    Conserved Domains (3) summary
    cd01041
    Location:3 → 146
    Rubrerythrin; Rubrerythrin, ferritin-like diiron-binding domain
    COG1592
    Location:1 → 191
    YotD; Rubrerythrin [Energy production and conversion]
    cd00729
    Location:157 → 188
    rubredoxin_SM; Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ...
Nucleotide Protein
Heading Accession and Version

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