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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_003972.3 → NP_003963.1 TATA-binding protein-associated factor 172
See identical proteins and their annotated locations for NP_003963.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the protein-coding transcript.
- Source sequence(s)
-
AF038362, AL365398, DB164703
- Consensus CDS
-
CCDS7419.1
- UniProtKB/Swiss-Prot
- B4E0W6, O14981, O43578
- UniProtKB/TrEMBL
-
Q2M1V9
- Related
- ENSP00000265990.6, ENST00000265990.12
- Conserved Domains (3) summary
-
- COG0553
Location:1236 → 1801
- HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
- sd00044
Location:352 → 377
- HEAT; HEAT repeat [structural motif]
- pfam12054
Location:594 → 1051
- DUF3535; Domain of unknown function (DUF3535)
RNA
-
NR_165090.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL359198, AL365398
-
NR_165091.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL359198, AL365398
-
NR_165092.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL359198, AL365398
-
NR_165093.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL359198, AL365398
-
NR_165094.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL359198, AL365398
-
NR_165095.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL359198, AL365398
-
NR_165096.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL359198, AL365398
-
NR_165097.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL359198, AL365398
-
NR_165098.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL359198, AL365398
-
NR_165099.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL359198, AL365398
-
NR_165101.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL359198, AL365398
-
NR_165102.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL359198, AL365398
-
NR_165103.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL359198, AL365398
-
NR_165104.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL359198, AL365398
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000010.11 Reference GRCh38.p14 Primary Assembly
- Range
-
91923770..92031437
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011540326.3 → XP_011538628.1 TATA-binding protein-associated factor 172 isoform X1
- Conserved Domains (5) summary
-
- COG0553
Location:1199 → 1764
- HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
- COG1413
Location:259 → 554
- HEAT; HEAT repeat [General function prediction only]
- sd00044
Location:352 → 377
- HEAT; HEAT repeat [structural motif]
- cd17999
Location:1229 → 1466
- DEXHc_Mot1; DEXH-box helicase domain of Mot1
- pfam12054
Location:549 → 1014
- DUF3535; Domain of unknown function (DUF3535)
-
XM_017016877.2 → XP_016872366.1 TATA-binding protein-associated factor 172 isoform X2
-
XM_011540327.3 → XP_011538629.1 TATA-binding protein-associated factor 172 isoform X3
- Conserved Domains (4) summary
-
- COG0553
Location:1112 → 1677
- HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
- sd00044
Location:228 → 253
- HEAT; HEAT repeat [structural motif]
- cd17999
Location:1142 → 1379
- DEXHc_Mot1; DEXH-box helicase domain of Mot1
- pfam12054
Location:462 → 927
- DUF3535; Domain of unknown function (DUF3535)
-
XM_011540328.3 → XP_011538630.1 TATA-binding protein-associated factor 172 isoform X4
- Conserved Domains (4) summary
-
- COG0553
Location:1080 → 1645
- HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
- sd00044
Location:196 → 221
- HEAT; HEAT repeat [structural motif]
- cd17999
Location:1110 → 1347
- DEXHc_Mot1; DEXH-box helicase domain of Mot1
- pfam12054
Location:430 → 895
- DUF3535; Domain of unknown function (DUF3535)
-
XM_047425989.1 → XP_047281945.1 TATA-binding protein-associated factor 172 isoform X5
Alternate T2T-CHM13v2.0
Genomic
-
NC_060934.1 Alternate T2T-CHM13v2.0
- Range
-
92805881..92913817
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054367116.1 → XP_054223091.1 TATA-binding protein-associated factor 172 isoform X1
-
XM_054367117.1 → XP_054223092.1 TATA-binding protein-associated factor 172 isoform X2
-
XM_054367118.1 → XP_054223093.1 TATA-binding protein-associated factor 172 isoform X3
-
XM_054367119.1 → XP_054223094.1 TATA-binding protein-associated factor 172 isoform X4
-
XM_054367120.1 → XP_054223095.1 TATA-binding protein-associated factor 172 isoform X5
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NR_165100.1: Suppressed sequence
- Description
- NR_165100.1: This RefSeq was removed because it was a duplicate of NR_165099.1.