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Pmar_PMAR010911 U6 snRNP protein Lsm2, putative [ Perkinsus marinus ATCC 50983 ]

Gene ID: 9051489, updated on 28-Dec-2023

Summary

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Gene symbol
Pmar_PMAR010911
Gene description
U6 snRNP protein Lsm2, putative
Locus tag
Pmar_PMAR010911
See related
VectorBase:PMAR010911
Gene type
protein coding
RNA name
U6 snRNP protein Lsm2, putative
RefSeq status
PROVISIONAL
Organism
Perkinsus marinus ATCC 50983 (strain: ATCC 50983, culture-collection: ATCC:50983)
Lineage
Eukaryota; Alveolata; Perkinsea; Perkinsida; Perkinsidae; Perkinsus
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Genomic context

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Exon count:
4

NW_003202100.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hemolysin iii, putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003202100.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Lsm1-7-Pat1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
U6 snRNP protein Lsm2, putative
XP_002766931.1
  • encoded by transcript Pmar_PMAR010911-RA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

mRNA and Protein(s)

  1. XM_002766885.1 → XP_002766931.1  U6 snRNP protein Lsm2, putative [Perkinsus marinus ATCC 50983]

    See identical proteins and their annotated locations for XP_002766931.1

    UniProtKB/TrEMBL
    C5LUB5
    Conserved Domains (1) summary
    cd01725
    Location:2 → 90
    LSm2; Like-Sm protein 2
Nucleotide Protein
Heading Accession and Version

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