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SNR56 [ Saccharomyces cerevisiae S288C ]

Gene ID: 9164868, updated on 11-Apr-2024

Summary

Gene symbol
SNR56
Primary source
SGD:S000006447
Locus tag
YNCB0003W
See related
AllianceGenome:SGD:S000006447
Gene type
ncRNA
RNA name
snoRNA
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Enables rRNA 2'-O-ribose methylation guide activity. Involved in rRNA methylation. Predicted to be located in nucleolus. Predicted to be part of box C/D RNP complex. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

See SNR56 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_001134.8 (88190..88277)

Chromosome II - NC_001134.8Genomic Context describing neighboring genes Neighboring gene Hsp70 family ATPase SSA3 Neighboring gene U5 snRNP complex subunit AAR2 Neighboring gene ribosomal 40S subunit protein S8A Neighboring gene uncharacterized protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

  • C/D box small nucleolar RNA (snoRNA); guides 2'-O-methylation of small subunit (SSU) rRNA at position G1428

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables rRNA 2'-O-ribose methylation guide activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables rRNA 2'-O-ribose methylation guide activity ISM
Inferred from Sequence Model
more info
PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in rRNA methylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in rRNA methylation ISM
Inferred from Sequence Model
more info
PubMed 
Component Evidence Code Pubs
part_of box C/D methylation guide snoRNP complex IC
Inferred by Curator
more info
PubMed 
located_in nucleolus IC
Inferred by Curator
more info
PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001134.8 Reference assembly

    Range
    88190..88277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_132151.1 RNA Sequence

    Status: REVIEWED