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SNR47 [ Saccharomyces cerevisiae S288C ]

Gene ID: 9164877, updated on 11-Apr-2024

Summary

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Gene symbol
SNR47
Primary source
SGD:S000006507
Locus tag
YNCD0010C
See related
AllianceGenome:SGD:S000006507
Gene type
ncRNA
RNA name
snoRNA
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Enables rRNA 2'-O-ribose methylation guide activity. Involved in rRNA methylation. Predicted to be located in nucleolus. Predicted to be part of box C/D RNP complex. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See SNR47 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
1
Sequence:
Chromosome: IV; NC_001136.10 (541602..541700, complement)

Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene mitochondrial 37S ribosomal protein RSM10 Neighboring gene uncharacterized protein Neighboring gene transcriptional regulator NRG1 Neighboring gene coproporphyrinogen oxidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001136.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Intrinsic dynamics of an extended hydrophobic core in the S. cerevisiae RNase III dsRBD contributes to recognition of specific RNA binding sites. Hartman E, et al. J Mol Biol, 2013 Feb 8. PMID 23201338, Free PMC Article
  2. Structural insights into cis element recognition of non-polyadenylated RNAs by the Nab3-RRM. Lunde BM, et al. Nucleic Acids Res, 2011 Jan. PMID 20805243, Free PMC Article
  3. Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III. Wu H, et al. Proc Natl Acad Sci U S A, 2004 Jun 1. PMID 15150409, Free PMC Article
  4. Solution structure of conserved AGNN tetraloops: insights into Rnt1p RNA processing. Lebars I, et al. EMBO J, 2001 Dec 17. PMID 11743001, Free PMC Article
  5. Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts. Carroll KL, et al. Mol Cell Biol, 2004 Jul. PMID 15226427, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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  • C/D box small nucleolar RNA (snoRNA); guides 2'-O-methylation of large subunit (LSU) rRNA at position A2220 and small subunit (SSU) rRNA at position A619

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables rRNA 2'-O-ribose methylation guide activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables rRNA 2'-O-ribose methylation guide activity ISM
Inferred from Sequence Model
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA methylation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in rRNA methylation ISM
Inferred from Sequence Model
more info
 PubMed 
Component Evidence Code Pubs
part_of box C/D methylation guide snoRNP complex IC
Inferred by Curator
more info
 PubMed 
located_in nucleolus IC
Inferred by Curator
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001136.10 Reference assembly

    Range
    541602..541700 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_132160.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases