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SNR86 [ Saccharomyces cerevisiae S288C ]

Gene ID: 9164959, updated on 2-Nov-2024

Summary

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Official Symbol
SNR86
Primary source
SGD:S000119075
Locus tag
YNCM0034C
See related
AllianceGenome:SGD:S000119075
Gene type
ncRNA
RNA name
snoRNA
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Enables rRNA pseudouridylation guide activity. Involved in rRNA pseudouridine synthesis. Part of box H/ACA snoRNP complex. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See SNR86 in Genome Data Viewer
Location:
chromosome: XIII
Exon count:
1
Sequence:
Chromosome: XIII; NC_001145.3 (762110..763113, complement)

Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene Coa6p Neighboring gene long-chain fatty acid-CoA ligase FAA4 Neighboring gene ubiquitin-protein ligase RKR1 Neighboring gene tRNA-Ala

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001145.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. Torchet C, et al. RNA, 2005 Jun. PMID 15923376, Free PMC Article
  2. A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae. Samarsky DA, et al. Nucleic Acids Res, 1999 Jan 1. PMID 9847166, Free PMC Article
  3. New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. Piekna-Przybylska D, et al. RNA, 2007 Mar. PMID 17283215, Free PMC Article
  4. Rbp95 binds to 25S rRNA helix H95 and cooperates with the Npa1 complex during early pre-60S particle maturation. Bhutada P, et al. Nucleic Acids Res, 2022 Sep 23. PMID 36018804, Free PMC Article
  5. Transcriptome-wide binding sites for components of the Saccharomyces cerevisiae non-poly(A) termination pathway: Nrd1, Nab3, and Sen1. Creamer TJ, et al. PLoS Genet, 2011 Oct. PMID 22028667, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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  • H/ACA box small nucleolar RNA (snoRNA); guides pseudouridylation of large subunit (LSU) rRNA at position U2314

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables rRNA pseudouridylation guide activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA pseudouridine synthesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of box H/ACA snoRNP complex IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in nucleolus IC
Inferred by Curator
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001145.3 Reference assembly

    Range
    762110..763113 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_132248.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

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