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SNR49 [ Saccharomyces cerevisiae S288C ]

Gene ID: 9164966, updated on 11-Sep-2024

Summary

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Official Symbol
SNR49
Primary source
SGD:S000007460
Locus tag
YNCN0018W
See related
AllianceGenome:SGD:S000007460
Gene type
ncRNA
RNA name
snoRNA
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Enables rRNA pseudouridylation guide activity. Involved in snoRNA guided rRNA pseudouridine synthesis. Part of box H/ACA snoRNP complex. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See SNR49 in Genome Data Viewer
Location:
chromosome: XIV
Exon count:
1
Sequence:
Chromosome: XIV; NC_001146.8 (716120..716284)

Chromosome XIV - NC_001146.8Genomic Context describing neighboring genes Neighboring gene Mso1p Neighboring gene saccharopine dehydrogenase (NADP+, L-glutamate-forming) Neighboring gene Bre5p Neighboring gene CCR4-NOT core DEDD family RNase subunit POP2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001146.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA. Schwartz S, et al. Cell, 2014 Sep 25. PMID 25219674, Free PMC Article
  2. The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. Torchet C, et al. RNA, 2005 Jun. PMID 15923376, Free PMC Article
  3. Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome. Schattner P, et al. Nucleic Acids Res, 2004. PMID 15306656, Free PMC Article
  4. A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae. Samarsky DA, et al. Nucleic Acids Res, 1999 Jan 1. PMID 9847166, Free PMC Article
  5. New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. Piekna-Przybylska D, et al. RNA, 2007 Mar. PMID 17283215, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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  • H/ACA box small nucleolar RNA (snoRNA); guides pseudouridylation of large subunit (LSU) rRNA at position U990 and small subunit (SSU) rRNA at positions U120, U211, and U302

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables rRNA pseudouridylation guide activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in snoRNA guided rRNA pseudouridine synthesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of box H/ACA snoRNP complex IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in nucleolus IC
Inferred by Curator
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001146.8 Reference assembly

    Range
    716120..716284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_132253.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

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Research Materials