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SNR17A [ Saccharomyces cerevisiae S288C ]

Gene ID: 9164981, updated on 2-Nov-2024

Summary

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Official Symbol
SNR17A
Primary source
SGD:S000007294
Locus tag
YNCO0025W
See related
AllianceGenome:SGD:S000007294
Gene type
ncRNA
RNA name
snoRNA
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Enables rRNA binding activity. Involved in endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Located in nucleolus. Part of 90S preribosome; box C/D methylation guide snoRNP complex; and small-subunit processome. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See SNR17A in Genome Data Viewer
Location:
chromosome: XV
Exon count:
1
Sequence:
Chromosome: XV; NC_001147.6 (780107..780596)

Chromosome XV - NC_001147.6Genomic Context describing neighboring genes Neighboring gene putative serine/threonine protein kinase KIN4 Neighboring gene ribosomal 60S subunit protein L33B Neighboring gene Irc13p Neighboring gene dihydrofolate reductase Neighboring gene oxysterol-binding protein related protein HES1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001147.6

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An experimental study of Saccharomyces cerevisiae U3 snRNA conformation in solution. Ségault V, et al. Nucleic Acids Res, 1992 Jul 11. PMID 1630915, Free PMC Article
  2. Secondary structure of the yeast Saccharomyces cerevisiae pre-U3A snoRNA and its implication for splicing efficiency. Mougin A, et al. RNA, 1996 Nov. PMID 8903339, Free PMC Article
  3. An intron in the genes for U3 small nucleolar RNAs of the yeast Saccharomyces cerevisiae. Myslinski E, et al. Science, 1990 Mar 9. PMID 1690452
  4. Yeast U3 localization and correct sequence (snR17a) and promotor activity (snR17b) identified by homology search. Dandekar T. DNA Seq, 1991. PMID 1773061
  5. The yeast homologue of U3 snRNA. Hughes JM, et al. EMBO J, 1987 Jul. PMID 3308452, Free PMC Article

See all (53) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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  • Small nucleolar RNA (snoRNA) U3; part of Small ribosomal SubUnit (SSU) processome; SNR17B also encodes snoRNA U3

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables RNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables RNA binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables rRNA binding IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables rRNA binding IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome HDA PubMed 
part_of 90S preribosome IDA
Inferred from Direct Assay
more info
 PubMed 
part_of box C/D methylation guide snoRNP complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of box C/D methylation guide snoRNP complex IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IDA
Inferred from Direct Assay
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001147.6 Reference assembly

    Range
    780107..780596
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_132262.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

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