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SNR41 [ Saccharomyces cerevisiae S288C ]

Gene ID: 9164986, updated on 11-Apr-2024

Summary

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Gene symbol
SNR41
Primary source
SGD:S000007305
Locus tag
YNCP0015C
See related
AllianceGenome:SGD:S000007305
Gene type
ncRNA
RNA name
snoRNA
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Enables rRNA 2'-O-ribose methylation guide activity. Involved in rRNA methylation. Predicted to be located in nucleolus. Predicted to be part of box C/D RNP complex. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See SNR41 in Genome Data Viewer
Location:
chromosome: XVI
Exon count:
1
Sequence:
Chromosome: XVI; NC_001148.4 (719148..719242, complement)

Chromosome XVI - NC_001148.4Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ubiquitin-protein ligase ASR1 Neighboring gene U2 snRNP complex subunit RDS3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001148.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nuclear fate of yeast snoRNA is determined by co-transcriptional Rnt1 cleavage. Grzechnik P, et al. Nat Commun, 2018 May 3. PMID 29725044, Free PMC Article
  2. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. Kiss-László Z, et al. Cell, 1996 Jun 28. PMID 8674114
  3. A computational screen for methylation guide snoRNAs in yeast. Lowe TM, et al. Science, 1999 Feb 19. PMID 10024243
  4. A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae. Samarsky DA, et al. Nucleic Acids Res, 1999 Jan 1. PMID 9847166, Free PMC Article
  5. New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. Piekna-Przybylska D, et al. RNA, 2007 Mar. PMID 17283215, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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  • C/D box small nucleolar RNA (snoRNA); guides 2'-O-methylation of small subunit (SSU) rRNA at positions A541 and G1126

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables rRNA 2'-O-ribose methylation guide activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables rRNA 2'-O-ribose methylation guide activity ISM
Inferred from Sequence Model
more info
 PubMed 
enables rRNA 2'-O-ribose methylation guide activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA methylation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in rRNA methylation ISM
Inferred from Sequence Model
more info
 PubMed 
involved_in rRNA methylation ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
part_of box C/D methylation guide snoRNP complex IC
Inferred by Curator
more info
 PubMed 
located_in nucleolus IC
Inferred by Curator
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001148.4 Reference assembly

    Range
    719148..719242 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_132270.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

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Molecular Biology Databases
Research Materials