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LOC9266353 AT-hook motif nuclear-localized protein 21 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9266353, updated on 12-Jul-2024

Summary

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Gene symbol
LOC9266353
Gene description
AT-hook motif nuclear-localized protein 21
Locus tag
OSNPB_010246601
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC9266353 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (8082594..8083521, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (8070803..8072053, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene low molecular mass early light-inducible protein HV60, chloroplastic Neighboring gene uncharacterized LOC4326758 Neighboring gene probable WRKY transcription factor 31 Neighboring gene uncharacterized LOC136354949

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables minor groove of adenine-thymine-rich DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AT-hook motif nuclear-localized protein 21
Names
DNA-binding protein-like
OSJNBa0004G10.22
Os01g0246601

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    8082594..8083521 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788611.3 → XP_015644097.1  AT-hook motif nuclear-localized protein 21

    UniProtKB/TrEMBL
    A0A0P0V0U4, Q1EHT3
    Conserved Domains (1) summary
    cl00720
    Location:54 → 122
    DUF296; Domain of unknown function found in archaea, bacteria, and plants
Nucleotide Protein
Heading Accession and Version

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