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LOC9325907 ferredoxin-1, chloroplastic [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9325907, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9325907
Gene description
ferredoxin-1, chloroplastic
Locus tag
ARALYDRAFT_471234
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9325907 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302555.1 (4366708..4367554)

NW_003302555.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase SRK2A Neighboring gene transmembrane 9 superfamily member 1 Neighboring gene zinc transporter 4, chloroplastic Neighboring gene transmembrane protein 87B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302555 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 2 iron, 2 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables electron transfer activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in electron transport chain IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ferredoxin-1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302555.1 Reference v.1.0 Primary Assembly

    Range
    4366708..4367554
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002889797.2 → XP_002889843.1  ferredoxin-1, chloroplastic

    See identical proteins and their annotated locations for XP_002889843.1

    UniProtKB/TrEMBL
    D7KLL2
    Conserved Domains (2) summary
    PLN03136
    Location:1 → 148
    PLN03136; Ferredoxin; Provisional
    TIGR02008
    Location:53 → 147
    fdx_plant; ferredoxin [2Fe-2S]
Nucleotide Protein
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