U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ymfQ DUF2313 domain-containing protein YmfQ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945707, updated on 19-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
ymfQ
Official Full Name
DUF2313 domain-containing protein YmfQ
Primary source
ECOCYC:G6597
Locus tag
b1153
See related
ASAP:ABE-0003874
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1139
Summary
YmfQ (COG3778, DUF2313) is related to many prophage proteins predicted to be tail proteins and is distantly related by psi-blast to gp15.1 (NCBI: [More information is available at EcoGene: EG14255].
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_000913.3 (1206913..1207497)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene chimeric replication protein/phage terminase YmfN Neighboring gene pseudo Neighboring gene IPR020297 domain-containing protein YmfR Neighboring gene protein BeeE Neighboring gene pseudo Neighboring gene protein StfP Neighboring gene putative tail fiber assembly protein TfaP Neighboring gene putative tail fiber assembly protein TfaE

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Analysis of the lambdoid prophage element e14 in the E. coli K-12 genome. Mehta P, et al. BMC Microbiol, 2004 Jan 20. PMID 14733619, Free PMC Article
  2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

Go to the top of the page Help
Preferred Names
DUF2313 domain-containing protein YmfQ

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1206913..1207497
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415671.1 DUF2313 domain-containing protein YmfQ [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415671.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6C9Q9Z6
    Conserved Domains (1) summary
    COG3778
    Location:3 → 194
    YmfQ; Uncharacterized protein YmfQ in lambdoid prophage, DUF2313 family [Mobilome: prophages, transposons]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.