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ydeT fimbrial usher domain-containing protein YdeT [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946042, updated on 19-Sep-2024

Summary

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Official Symbol
ydeT
Official Full Name
fimbrial usher domain-containing protein YdeT
Primary source
ECOCYC:G6795
Locus tag
b1505
See related
ASAP:ABE-0005017
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1498; fmlC
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Genomic context

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Sequence:
NC_000913.3 (1588853..1590001, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative fimbrial protein YdeR Neighboring gene putative fimbrial protein YdeS Neighboring gene pseudo Neighboring gene serine/threonine-protein kinase toxin HipA Neighboring gene antitoxin/DNA-binding transcriptional repressor HipB

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for a novel domain of bacterial outer membrane ushers. Capitani G, et al. Proteins, 2006 Dec 1. PMID 17066380
  2. Bacterial outer membrane ushers contain distinct targeting and assembly domains for pilus biogenesis. Thanassi DG, et al. J Bacteriol, 2002 Nov. PMID 12399496, Free PMC Article
  3. Analysis of the requirements for pilus biogenesis at the outer membrane usher and the function of the usher C-terminus. So SS, et al. Mol Microbiol, 2006 Apr. PMID 16573686
  4. The outer membrane usher forms a twin-pore secretion complex. Li H, et al. J Mol Biol, 2004 Dec 10. PMID 15561151
  5. Chaperone-subunit-usher interactions required for donor strand exchange during bacterial pilus assembly. Barnhart MM, et al. J Bacteriol, 2003 May. PMID 12700251, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables fimbrial usher porin activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables fimbrial usher porin activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in pilus assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in pilus assembly IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cell outer membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
fimbrial usher domain-containing protein YdeT

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1588853..1590001 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009518785.1 fimbrial usher domain-containing protein YdeT [Escherichia coli str. K-12 substr. MG1655]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2X7JWB2
    Conserved Domains (1) summary
    COG3188
    Location:20 → 382
    FimD; Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures]
Nucleotide Protein
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