U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TRVs1gp4 16 kDa protein [ Tobacco rattle virus ]

Gene ID: 962132, updated on 18-Aug-2023

Summary

Go to the top of the page Help
Gene symbol
TRVs1gp4
Gene description
16 kDa protein
Locus tag
TRVs1gp4
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Tobacco rattle virus (isolate: PpK20)
Lineage
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae; Tobravirus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
segment: RNA 1
Sequence:
NC_003805.1 (6111..6536)

NC_003805.1Genomic Context describing neighboring genes Neighboring gene 134 kDa protein Neighboring gene 194 kDa protein Neighboring gene 29 kDa protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003805.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Tobacco rattle virus 16K silencing suppressor binds ARGONAUTE 4 and inhibits formation of RNA silencing complexes. Fernández-Calvino L, et al. J Gen Virol, 2016 Jan. PMID 26498945
  2. Functional characterization and subcellular localization of the 16K cysteine-rich suppressor of gene silencing protein of tobacco rattle virus. Ghazala W, et al. J Gen Virol, 2008 Jul. PMID 18559946
  3. The organisation and interviral homologies of genes at the 3' end of tobacco rattle virus RNA1. Boccara M, et al. EMBO J, 1986 Feb. PMID 16453668, Free PMC Article
  4. The complete nucleotide sequence of tobacco rattle virus RNA-1. Hamilton WD, et al. J Gen Virol, 1987 Oct. PMID 3668507

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. 16K failed to bind small RNAs, although it interacted with Nicotiana benthamiana ARGONAUTE 4, as revealed by bimolecular fluorescence complementation and immunoprecipitation assays.
    Title: Tobacco rattle virus 16K silencing suppressor binds ARGONAUTE 4 and inhibits formation of RNA silencing complexes.
  2. In this study, the authors show that 16K suppresses RNA silencing in green fluorescent protein (GFP)-transgenic Nicotiana benthamiana plants using an Agrobacterium-mediated transient assay.
    Title: Functional characterization and subcellular localization of the 16K cysteine-rich suppressor of gene silencing protein of tobacco rattle virus.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
16 kDa protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003805.1 Reference assembly

    Range
    6111..6536
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_620672.1 16 kDa protein [Tobacco rattle virus]

    See identical proteins and their annotated locations for NP_620672.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P05077, Q77JX3
    UniProtKB/TrEMBL
    A0A0U3J397, A0A0U3U504, Q5MBU8, Q5MBV3
    Conserved Domains (1) summary
    pfam05304
    Location:2 → 140
    DUF728; Protein of unknown function (DUF728)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
1204180A.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases