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A430005L14Rik RIKEN cDNA A430005L14 gene [ Mus musculus (house mouse) ]

Gene ID: 97159, updated on 2-Nov-2024

Summary

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Official Symbol
A430005L14Rikprovided by MGI
Official Full Name
RIKEN cDNA A430005L14 geneprovided by MGI
Primary source
MGI:MGI:2140680
See related
Ensembl:ENSMUSG00000047613 AllianceGenome:MGI:2140680
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in nucleoplasm. Orthologous to human C1orf174 (chromosome 1 open reading frame 174). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in testis adult (RPKM 28.6), CNS E11.5 (RPKM 19.4) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See A430005L14Rik in Genome Data Viewer
Location:
4 E2; 4 83.78 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (154041694..154046382)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (153957237..153961925)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_12225 Neighboring gene predicted gene, 25880 Neighboring gene cDNA sequence BC039966 Neighboring gene STARR-positive B cell enhancer ABC_E6293 Neighboring gene DNA fragmentation factor, beta subunit Neighboring gene centrosomal protein 104 Neighboring gene predicted gene, 31566

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Functional analysis of candidate genes from genome-wide association studies of hearing. Ingham NJ, et al. Hear Res, 2020 Mar 1. PMID 31927188, Free PMC Article
  2. Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia. Carninci P, et al. Genome Res, 2003 Jun. PMID 12819125, Free PMC Article
  3. Mouse screen reveals multiple new genes underlying mouse and human hearing loss. Ingham NJ, et al. PLoS Biol, 2019 Apr. PMID 30973865, Free PMC Article
  4. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  5. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
UPF0688 protein C1orf174 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163019.1 → NP_001156491.1  UPF0688 protein C1orf174 homolog isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    AK039812, BC052148, BE994111, BY781135
    Consensus CDS
    CCDS51395.1
    UniProtKB/TrEMBL
    A0A0A0MQL2, E9PUH0
    Related
    ENSMUSP00000101270.3, ENSMUST00000105645.9
    Conserved Domains (1) summary
    pfam15772
    Location:6 → 184
    UPF0688; UPF0688 family

  2. NM_175287.4 → NP_780496.2  UPF0688 protein C1orf174 homolog isoform 1

    See identical proteins and their annotated locations for NP_780496.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK039812, BC052148, BE994111
    Consensus CDS
    CCDS19003.1
    UniProtKB/Swiss-Prot
    A2AM12, Q80WR5, Q8CA21
    Related
    ENSMUSP00000054638.3, ENSMUST00000058393.9
    Conserved Domains (1) summary
    pfam15772
    Location:6 → 222
    UPF0688; UPF0688 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    154041694..154046382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q80WR5.1 GenPept UniProtKB/Swiss-Prot:Q80WR5

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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