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D630023F18Rik RIKEN cDNA D630023F18 gene [ Mus musculus (house mouse) ]

Gene ID: 98303, updated on 2-Nov-2024

Summary

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Official Symbol
D630023F18Rikprovided by MGI
Official Full Name
RIKEN cDNA D630023F18 geneprovided by MGI
Primary source
MGI:MGI:2138198
See related
Ensembl:ENSMUSG00000044816 AllianceGenome:MGI:2138198
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in brain; embryo; eye; and heart. Orthologous to human C2orf80 (chromosome 2 open reading frame 80). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in kidney adult (RPKM 16.9), ovary adult (RPKM 1.7) and 3 other tissues See more
Orthologs
human all
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Genomic context

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See D630023F18Rik in Genome Data Viewer
Location:
1 C2; 1 32.84 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (65144443..65162509, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (65105284..65123351, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_01174 Neighboring gene malic enzyme, supernatant pseudogene Neighboring gene crystallin, gamma A Neighboring gene predicted gene, 36358 Neighboring gene STARR-seq mESC enhancer starr_01175 Neighboring gene STARR-seq mESC enhancer starr_01176 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:65224921-65225030 Neighboring gene isocitrate dehydrogenase 1 (NADP+), soluble Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:65225772-65225881 Neighboring gene STARR-positive B cell enhancer ABC_E5765 Neighboring gene phosphoinositide kinase, FYVE type zinc finger containing Neighboring gene STARR-positive B cell enhancer ABC_E5766

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identification of novel radiation-induced p53-dependent transcripts extensively regulated during mouse brain development. Quintens R, et al. Biol Open, 2015 Feb 13. PMID 25681390, Free PMC Article
  2. A novel view of the transcriptome revealed from gene trapping in mouse embryonic stem cells. Roma G, et al. Genome Res, 2007 Jul. PMID 17540781, Free PMC Article
  3. Mouse screen reveals multiple new genes underlying mouse and human hearing loss. Ingham NJ, et al. PLoS Biol, 2019 Apr. PMID 30973865, Free PMC Article
  4. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
  5. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C2orf80 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001285881.1 → NP_001272810.1  uncharacterized protein C2orf80 homolog isoform 2

    See identical proteins and their annotated locations for NP_001272810.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform 1.
    Source sequence(s)
    AC101869, AK085417, AK164708
    UniProtKB/TrEMBL
    B2RQD7

  2. NM_001285882.1 → NP_001272811.1  uncharacterized protein C2orf80 homolog isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate in-frame splice site in the 5' coding region and contains an alternate terminal exon, compared to variant 1. This results in a shorter protein (isoform 3) with a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AC101869, AK085417, AK164708
    Consensus CDS
    CCDS69896.1
    UniProtKB/TrEMBL
    D3YUK5
    Related
    ENSMUSP00000120090.2, ENSMUST00000148020.8

  3. NM_175293.4 → NP_780502.1  uncharacterized protein C2orf80 homolog isoform 1

    See identical proteins and their annotated locations for NP_780502.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest variant and encodes the longest isoform (1).
    Source sequence(s)
    AC101869, AK085417
    Consensus CDS
    CCDS15015.1
    UniProtKB/Swiss-Prot
    Q8C3M9
    Related
    ENSMUSP00000056196.4, ENSMUST00000050047.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    65144443..65162509 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030243843.2 → XP_030099703.1  uncharacterized protein C2orf80 homolog isoform X3

    Conserved Domains (1) summary
    pfam17718
    Location:39 → 222
    DUF5563; Family of unknown function (DUF5563)

  2. XM_030243847.2 → XP_030099707.1  uncharacterized protein C2orf80 homolog isoform X4

    Conserved Domains (1) summary
    pfam17718
    Location:39 → 216
    DUF5563; Family of unknown function (DUF5563)

  3. XM_030243853.2 → XP_030099713.1  uncharacterized protein C2orf80 homolog isoform X5

    Conserved Domains (1) summary
    pfam17718
    Location:1 → 198
    DUF5563; Family of unknown function (DUF5563)

  4. XM_036154590.1 → XP_036010483.1  uncharacterized protein C2orf80 homolog isoform X8

    Conserved Domains (1) summary
    pfam17718
    Location:4 → 126
    DUF5563; Family of unknown function (DUF5563)

  5. XM_036154588.1 → XP_036010481.1  uncharacterized protein C2orf80 homolog isoform X7

    Conserved Domains (1) summary
    pfam17718
    Location:72 → 141
    DUF5563; Family of unknown function (DUF5563)

  6. XM_030243840.2 → XP_030099700.1  uncharacterized protein C2orf80 homolog isoform X1

    Conserved Domains (1) summary
    pfam17718
    Location:39 → 220
    DUF5563; Family of unknown function (DUF5563)

  7. XM_036154580.1 → XP_036010473.1  uncharacterized protein C2orf80 homolog isoform X2

    Conserved Domains (1) summary
    pfam17718
    Location:39 → 214
    DUF5563; Family of unknown function (DUF5563)

  8. XM_036154584.1 → XP_036010477.1  uncharacterized protein C2orf80 homolog isoform X6

    Conserved Domains (1) summary
    pfam17718
    Location:4 → 124
    DUF5563; Family of unknown function (DUF5563)

RNA

  1. XR_003947354.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8C3M9.1 GenPept UniProtKB/Swiss-Prot:Q8C3M9

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