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    LOC100420466 dual specificity phosphatase 3 pseudogene [ Homo sapiens (human) ]

    Gene ID: 100420466, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC100420466
    Gene description
    dual specificity phosphatase 3 pseudogene
    See related
    Ensembl:ENSG00000214254
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC100420466 in Genome Data Viewer
    Location:
    15q12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (27208089..27208629, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (24949698..24950238, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (27453236..27453776, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyric acid type A receptor subunit gamma3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:27332339-27332839 Neighboring gene uncharacterized LOC107984766 Neighboring gene GABRG3 antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 5301 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:27438261-27438762 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:27471561-27472061 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:27499740-27500244 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:27516499-27516999 Neighboring gene RNA, 5S ribosomal pseudogene 391 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr15:27585914-27587113 Neighboring gene serpin family E member 4, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_025290.1 

      Range
      101..641
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      27208089..27208629 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      24949698..24950238 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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