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    ANTXRLP1 ANTXR like pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 100996567, updated on 17-Jun-2024

    Summary

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    Official Symbol
    ANTXRLP1provided by HGNC
    Official Full Name
    ANTXR like pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:45004
    See related
    AllianceGenome:HGNC:45004
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in lymph node (RPKM 1.3), appendix (RPKM 1.1) and 8 other tissues See more
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    Genomic context

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    See ANTXRLP1 in Genome Data Viewer
    Location:
    10q11.22
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (46219025..46269608, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (47099969..47150538, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (47590261..47640844, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene Neighboring gene uncharacterized LOC124902418 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47599617-47600271 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3325 Neighboring gene adenosylhomocysteinase pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47620679-47621178 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47622387-47622887 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47622963-47623464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47637588-47638253 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47643189-47644058 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47644059-47644928 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2351 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2352 Neighboring gene uncharacterized LOC105378577 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47669003-47669503 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47671191-47671769 Neighboring gene ANTXR like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47676205-47676704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47679859-47680464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47680465-47681068 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:47685074-47685574

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Dias Neto E, et al. Proc Natl Acad Sci U S A, 2000 Mar 28. PMID 10737800, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • anthrax toxin receptor-like pseudogene 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_103827.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AL450388, BE775052, BX091290, BX280825, HY092480

    2. NR_103828.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two internal exons, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AL450388, BE775052, BX091290, HY092480

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      46219025..46269608 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      47099969..47150538 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases
    Research Materials