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    GSTA9P glutathione S-transferase alpha 9, pseudogene [ Homo sapiens (human) ]

    Gene ID: 100174857, updated on 10-Oct-2023

    Summary

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    Official Symbol
    GSTA9Pprovided by HGNC
    Official Full Name
    glutathione S-transferase alpha 9, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:49902
    See related
    Ensembl:ENSG00000243236 AllianceGenome:HGNC:49902
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GSTA4P; GSTAP4
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    Genomic context

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    See GSTA9P in Genome Data Viewer
    Location:
    6p12.2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (52939907..52957522, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (52779411..52797036, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (52804705..52822320, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375091 Neighboring gene glutathione S-transferase alpha 10, pseudogene Neighboring gene glutathione S-transferase alpha 3 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:52774000-52774692 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:52774693-52775386 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:52787535-52788194 Neighboring gene Sharpr-MPRA regulatory region 1037 Neighboring gene MPRA-validated peak5857 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:52841001-52841876 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:52841877-52842750 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92160 Neighboring gene glutathione S-transferase alpha 4 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:52860003-52860234 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24693 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17287 Neighboring gene RNA component of 7SK nuclear ribonucleoprotein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The human glutathione transferase alpha locus: genomic organization of the gene cluster and functional characterization of the genetic polymorphism in the hGSTA1 promoter. Morel F, et al. Pharmacogenetics, 2002 Jun. PMID 12042665
    2. Comparative genomics search for losses of long-established genes on the human lineage. Zhu J, et al. PLoS Comput Biol, 2007 Dec. PMID 18085818, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • glutathione S-transferase alpha 4 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008343.3 

      Range
      101..17716
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      52939907..52957522 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      52779411..52797036 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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