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    LOC100131429 armadillo repeat containing 1 pseudogene [ Homo sapiens (human) ]

    Gene ID: 100131429, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC100131429
    Gene description
    armadillo repeat containing 1 pseudogene
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC100131429 in Genome Data Viewer
    Location:
    4q28.3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (138477233..138482307, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (141800940..141806014, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (139398387..139403461, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene SLC7A11 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21910 Neighboring gene NANOG hESC enhancer GRCh37_chr4:139138744-139139289 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr4:139144028-139144638 Neighboring gene solute carrier family 7 member 11 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:139162849-139164048 Neighboring gene uncharacterized LOC124900888 Neighboring gene long intergenic non-protein coding RNA 499 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21912 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:139319446-139320068 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21913 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:139476624-139477188 Neighboring gene NIN1 (RPN12) binding protein 1 homolog pseudogene Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:139568198-139569043 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:139579689-139580237 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:139578592-139579140 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:139580238-139580785 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:139580786-139581334 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:139581335-139581882 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:139660090-139660734 Neighboring gene GATA motif-containing MPRA enhancer 163 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:139696241-139696424 Neighboring gene uncharacterized LOC105377448 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:139764110-139765309 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:139787241-139787742 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:139821109-139821298 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:139831913-139832494 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21914 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:139854116-139854670 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:139898379-139899200 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21915 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21916

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_021295.1 

      Range
      101..5175
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      138477233..138482307 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      141800940..141806014 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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