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    LOC100128091 coiled-coil domain containing 25 pseudogene [ Homo sapiens (human) ]

    Gene ID: 100128091, updated on 17-Jun-2024

    Summary

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    Gene symbol
    LOC100128091
    Gene description
    coiled-coil domain containing 25 pseudogene
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC100128091 in Genome Data Viewer
    Location:
    1p34.2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (39717975..39718793)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (39587397..39588215)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (40183647..40184465)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 4263 Neighboring gene 5'-nucleotidase, cytosolic IA Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 709 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:40155381-40155607 Neighboring gene hippocalcin like 4 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 710 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 711 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:40157484-40158074 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:40166488-40167140 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:40176174-40176931 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:40177551-40178246 Neighboring gene RNA, U7 small nuclear 121 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 816 Neighboring gene peptidylprolyl isomerase E Neighboring gene bone morphogenetic protein 8b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_022777.2 

      Range
      101..919
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      39717975..39718793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      39587397..39588215
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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