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    LOC100420214 rhomboid domain containing 1 pseudogene [ Homo sapiens (human) ]

    Gene ID: 100420214, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC100420214
    Gene description
    rhomboid domain containing 1 pseudogene
    See related
    Ensembl:ENSG00000219409
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC100420214 in Genome Data Viewer
    Location:
    6q24.2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (144397963..144398838)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (145590578..145591453)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (144719099..144719974)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr6:144537315-144537779 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25213 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17639 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:144550475-144550694 Neighboring gene tRNA-Leu (anticodon TAA) 1-1 Neighboring gene MPRA-validated peak6183 silencer Neighboring gene MPRA-validated peak6184 silencer Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:144586575-144587308 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:144587309-144588042 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25214 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17640 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17641 Neighboring gene uncharacterized LOC124901418 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25215 Neighboring gene Sharpr-MPRA regulatory region 1397 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:144647748-144648492 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:144651868-144653067 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25216 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25217 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25218 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:144666170-144666670 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:144666671-144667171 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25219 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25220 Neighboring gene Sharpr-MPRA regulatory region 7657 Neighboring gene utrophin Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90719 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90731 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:144754756-144755258 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:144780729-144780932 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25221 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:144790768-144791444 Neighboring gene small nucleolar RNA, H/ACA box 98 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:144794141-144795340 Neighboring gene Sharpr-MPRA regulatory region 2668 Neighboring gene Sharpr-MPRA regulatory region 10150 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25222 Neighboring gene NANOG hESC enhancer GRCh37_chr6:145107948-145108449 Neighboring gene Sharpr-MPRA regulatory region 9645 Neighboring gene MPRA-validated peak6190 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr6:145134839-145135340 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:145190998-145191517 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:145218575-145219774 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:145272790-145273457 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:145275769-145276268 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:145298093-145298720 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:145327891-145328441 Neighboring gene NANOG hESC enhancer GRCh37_chr6:145424274-145424879 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:145456814-145458013 Neighboring gene tRNA-Gln (anticodon TTG) 4-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_025982.2 

      Range
      101..976
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      144397963..144398838
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      145590578..145591453
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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