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    KHSRPP1 KH-type splicing regulatory protein pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 402359, updated on 17-Sep-2024

    Summary

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    Official Symbol
    KHSRPP1provided by HGNC
    Official Full Name
    KH-type splicing regulatory protein pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:39198
    See related
    Ensembl:ENSG00000229835 AllianceGenome:HGNC:39198
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See KHSRPP1 in Genome Data Viewer
    Location:
    9p21.3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (21695174..21700073)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (21709376..21714273)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (21695173..21700072)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene MIR31 host gene Neighboring gene small nucleolar RNA SNORD55/SNORD39 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:21558572-21559358 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19808 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_107244 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:21684484-21685683 Neighboring gene H3 histone pseudogene 30 Neighboring gene uncharacterized LOC107987026 Neighboring gene melanoma risk locus-associated MPRA allelic enhancer 9:21720826 Neighboring gene RNA, 7SL, cytoplasmic 151, pseudogene Neighboring gene melanoma risk locus-associated MPRA allelic enhancer 9:21760452 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:21801514-21802144 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:21802145-21802773 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19809 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28241 Neighboring gene melanoma risk locus-associated MPRA allelic enhancer 9:21805208 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:21832108-21833307 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28243 Neighboring gene tubulin beta 8 class VIII pseudogene 1 Neighboring gene methylthioadenosine phosphorylase Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19810 Neighboring gene melanoma risk locus-associated MPRA allelic enhancer 9:21959860 Neighboring gene melanoma risk locus-associated MPRA allelic enhancer 9:21962977 Neighboring gene CDKN2A antisense RNA 1 Neighboring gene cyclin dependent kinase inhibitor 2A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • KH-type splicing regulatory protein (FUSE binding protein 2) pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_006557.2 

      Range
      101..5000
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      21695174..21700073
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      21709376..21714273
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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