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    LOC100420513 TNF receptor associated factor 4 pseudogene [ Homo sapiens (human) ]

    Gene ID: 100420513, updated on 17-Sep-2024

    Summary

    Gene symbol
    LOC100420513
    Gene description
    TNF receptor associated factor 4 pseudogene
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

    See LOC100420513 in Genome Data Viewer
    Location:
    5q31.3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (143751898..143752749, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (144283649..144284500, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (143131463..143132314, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378210 Neighboring gene microRNA 5197 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23350 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23351 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23352 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16485 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23353 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23354 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16486 Neighboring gene histocompatibility minor HB-1 Neighboring gene MPRA-validated peak5509 silencer Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:143456065-143456759 Neighboring gene NANOG hESC enhancer GRCh37_chr5:143504731-143505232 Neighboring gene RNA, 7SL, cytoplasmic 87, pseudogene

    Genomic regions, transcripts, and products

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_024632.2 

      Range
      101..952
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      143751898..143752749 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      144283649..144284500 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)