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    Tmem140 transmembrane protein 140 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362334, updated on 2-Nov-2024

    Summary

    Official Symbol
    Tmem140provided by RGD
    Official Full Name
    transmembrane protein 140provided by RGD
    Primary source
    RGD:1549759
    See related
    EnsemblRapid:ENSRNOG00000026965 AllianceGenome:RGD:1549759
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM140 (transmembrane protein 140). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Liver (RPKM 480.6), Kidney (RPKM 369.2) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Tmem140 in Genome Data Viewer
    Location:
    4q22
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (64503621..64514620)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (63536477..63547478)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (62380914..62391913)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene caldesmon 1 Neighboring gene uncharacterized LOC120102254 Neighboring gene AGBL carboxypeptidase 3 Neighboring gene cell cycle regulator of NHEJ Neighboring gene WD repeat domain 91 Neighboring gene stimulated by retinoic acid 8

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001009709.1NP_001009709.1  transmembrane protein 140

      See identical proteins and their annotated locations for NP_001009709.1

      Status: PROVISIONAL

      Source sequence(s)
      BC088293
      UniProtKB/Swiss-Prot
      Q5M826
      UniProtKB/TrEMBL
      A6IEM9
      Related
      ENSRNOP00000101820.1, ENSRNOT00000128538.1
      Conserved Domains (1) summary
      pfam14985
      Location:7184
      TM140; TM140 protein family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      64503621..64514620
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)