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    LINC01003 long intergenic non-protein coding RNA 1003 [ Homo sapiens (human) ]

    Gene ID: 100128822, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01003provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1003provided by HGNC
    Primary source
    HGNC:HGNC:48957
    See related
    Ensembl:ENSG00000261455 AllianceGenome:HGNC:48957
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LINC01003 in Genome Data Viewer
    Location:
    7q36.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (152464124..152465545)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (153637023..153638444)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (152161209..152162630)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18833 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:152138204-152138404 Neighboring gene fatty acid binding protein 5 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:152148566-152149066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:152149067-152149567 Neighboring gene chaperonin containing TCP1 subunit 8 like 1, pseudogene Neighboring gene H3K27ac hESC enhancers GRCh37_chr7:152161133-152161634 and GRCh37_chr7:152161635-152162134 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:152196994-152197494 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:152235514-152236024 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:152241416-152242207 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:152279154-152279654 Neighboring gene RNA, 5S ribosomal pseudogene 250 Neighboring gene ribosomal protein S20 pseudogene 19

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. m(6)A-mediated upregulation of LINC01003 regulates cell migration by targeting the CAV1/FAK signaling pathway in glioma. Zhu X, et al. Biol Direct, 2023 Jun 3. PMID 37270527, Free PMC Article
    2. Long non-coding RNA LINC01003 suppresses the development of multiple myeloma by targeting miR-33a-5p/PIM1 axis. Wu L, et al. Leuk Res, 2021 Jul. PMID 33865032
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. m[6]A-mediated upregulation of LINC01003 regulates cell migration by targeting the CAV1/FAK signaling pathway in glioma.
      Title: m(6)A-mediated upregulation of LINC01003 regulates cell migration by targeting the CAV1/FAK signaling pathway in glioma.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027387.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC036622, BI755992, BU742627, CF146980
      Related
      ENST00000564834.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      152464124..152465545
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      153637023..153638444
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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