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    CSPG4P1Y CSPG4 pseudogene 1 Y-linked [ Homo sapiens (human) ]

    Gene ID: 114758, updated on 17-Sep-2024

    Summary

    Official Symbol
    CSPG4P1Yprovided by HGNC
    Official Full Name
    CSPG4 pseudogene 1 Y-linkedprovided by HGNC
    Primary source
    HGNC:HGNC:16478
    See related
    Ensembl:ENSG00000240450 MIM:400034; AllianceGenome:HGNC:16478
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CSPG4LY; CSPG4P1; CSPG4PY1; CSPG4LYP1
    Summary
    There are two copies of this pseudogene within the P1 palindrome on chromosome Y. This record represents the more telomeric copy. [provided by RefSeq, Jul 2008]
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    Genomic context

    See CSPG4P1Y in Genome Data Viewer
    Location:
    Yq11.23
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (25482908..25486705)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (26295295..26299092)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (27629055..27632852)

    Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene GOLGA2 pseudogene 3 Y-linked Neighboring gene RNA, 7SL, cytoplasmic 725, pseudogene Neighboring gene CHRFAM7A pseudogene 1 Neighboring gene CSPG4 pseudogene 4 Y-linked Neighboring gene dynamin 1 pseudogene 48 Neighboring gene dynamin 1 pseudogene 26 Neighboring gene golgin A6 family like 14, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Other Names

    • chondroitin sulfate proteoglycan 4 pseudogene 1, Y-linked
    • chondroitin sulfate proteoglycan 4 pseudogene, Y-linked 1
    • chondroitin sulfate proteoglycan 4-like, Y-linked pseudogene 1

    Clone Names

    • AC006328.6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_001554.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006328
      Related
      ENST00000306641.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

      Range
      25482908..25486705
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060948.1 Alternate T2T-CHM13v2.0

      Range
      26295295..26299092
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)