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    LINC01418 long intergenic non-protein coding RNA 1418 [ Homo sapiens (human) ]

    Gene ID: 102724001, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC01418provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1418provided by HGNC
    Primary source
    HGNC:HGNC:50711
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    15q25.2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (81859747..81967194, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (79723213..79831229, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370921 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:81966619-81967178 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:81989805-81990445 Neighboring gene uncharacterized LOC124903541 Neighboring gene NANOG hESC enhancer GRCh37_chr15:82031361-82031872 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:82042098-82042672 Neighboring gene NANOG hESC enhancer GRCh37_chr15:82050490-82051006 Neighboring gene NANOG hESC enhancer GRCh37_chr15:82051007-82051522 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9957 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9958 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:82162852-82163453 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:82163454-82164054 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9959 Neighboring gene CRISPRi-validated cis-regulatory element chr15.2841 Neighboring gene MPRA-validated peak2399 silencer Neighboring gene uncharacterized LOC105370922 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:82287863-82288521 Neighboring gene protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) pseudogene Neighboring gene uncharacterized LOC105370923

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Antisense oligonucleotides targeting lncRNA AC104041.1 induces antitumor activity through Wnt2B/β-catenin pathway in head and neck squamous cell carcinomas. Li M, et al. Cell Death Dis, 2020 Aug 13. PMID 32826863, Free PMC Article
    2. A genome-wide association study of clinical symptoms of dissociation in a trauma-exposed sample. Wolf EJ, et al. Depress Anxiety, 2014 Apr. PMID 24677629, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    A genome-wide association study of clinical symptoms of dissociation in a trauma-exposed sample.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Clone Names

    • AC104041.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      81859747..81967194 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001751640.2 RNA Sequence

    2. XR_001751639.2 RNA Sequence

    3. XR_932527.3 RNA Sequence

    4. XR_001751642.2 RNA Sequence

    5. XR_001751641.2 RNA Sequence

    6. XR_932528.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      79723213..79831229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007085765.1 RNA Sequence

    2. XR_007085766.1 RNA Sequence

    3. XR_007085764.1 RNA Sequence

    4. XR_007085769.1 RNA Sequence

    5. XR_007085768.1 RNA Sequence

    6. XR_007085767.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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