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    LOC105378477 uncharacterized LOC105378477 [ Homo sapiens (human) ]

    Gene ID: 105378477, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105378477
    Gene description
    uncharacterized LOC105378477
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105378477 in Genome Data Viewer
    Location:
    10q25.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (108395651..108466397, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (109284355..109355089, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378476 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2803 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:110074996-110075594 Neighboring gene NANOG hESC enhancer GRCh37_chr10:110083009-110083537 Neighboring gene prostaglandin E synthase 3 pseudogene 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:110225477-110225978 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:110225979-110226478 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:110357598-110358137 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:110358260-110359459 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_9735 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_9749 Neighboring gene long intergenic non-protein coding RNA 2661 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_9758 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_9792 Neighboring gene MAPKAPK5 pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      108395651..108466397 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_946310.2 RNA Sequence

    2. XR_946309.2 RNA Sequence

    3. XR_946308.2 RNA Sequence

    4. XR_946312.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      109284355..109355089 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007081445.1 RNA Sequence

    2. XR_007081444.1 RNA Sequence

    3. XR_007081443.1 RNA Sequence

    4. XR_007081446.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Other Literature Sources
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