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    LOC101929322 integrator complex subunit 4 pseudogene [ Homo sapiens (human) ]

    Gene ID: 101929322, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC101929322
    Gene description
    integrator complex subunit 4 pseudogene
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    7q11.21
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (65492335..65555065, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (66710550..66773278, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (64957248..65019978, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr7:64838633-64838903 Neighboring gene MPRA-validated peak6540 silencer Neighboring gene zinc finger protein 92 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:64905072-64905245 Neighboring gene uncharacterized LOC124901660 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:64974100-64975098 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:64997202-64997702 Neighboring gene uncharacterized LOC124901800 Neighboring gene glutamate metabotropic receptor 8 pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr7:65103805-65104363 Neighboring gene long intergenic non-protein coding RNA 3006 Neighboring gene integrator complex subunit 4 pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 6763

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • integrator complex subunit 4-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_157837.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC104057, AC114501

    2. NR_157838.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC104057, AC104092, AC114501

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      65492335..65555065 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      66710550..66773278 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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