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    LOC107985580 uncharacterized LOC107985580 [ Homo sapiens (human) ]

    Gene ID: 107985580, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC107985580
    Gene description
    uncharacterized LOC107985580
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    22q11.23
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (23525936..23530042, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (23972877..23976972, complement)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 230 member I Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23836429-23836929 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23841411-23842158 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:23852177-23852679 Neighboring gene long intergenic non-protein coding RNA 2557 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13540 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23864674-23865240 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23865241-23865806 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23871859-23872474 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:23874941-23875556 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:23876790-23877405 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:23877406-23878022 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr22:23878638-23879254 Neighboring gene endogenous retrovirus group K member 5 Gag polyprotein-like Neighboring gene Sharpr-MPRA regulatory region 4313 Neighboring gene Sharpr-MPRA regulatory regions 962 and 2236 Neighboring gene prostate cancer associated transcript 14 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23891199-23891699 Neighboring gene Sharpr-MPRA regulatory region 8041 Neighboring gene uncharacterized LOC105372957

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      23525936..23530042 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001755452.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      23972877..23976972 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007090504.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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