U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from dbVar

    • Showing Current items.

    LOC105378618 uncharacterized LOC105378618 [ Homo sapiens (human) ]

    Gene ID: 105378618, updated on 10-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC105378618
    Gene description
    uncharacterized LOC105378618
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC105378618 in Genome Data Viewer
    Location:
    1p35.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (30253430..30261188)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (30096712..30104463)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 9119 Neighboring gene long intergenic non-protein coding RNA 1648 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30579535-30580036 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:30626667-30627480 Neighboring gene uncharacterized LOC105378617 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30663183-30663713 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30667220-30667720 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30702893-30703546 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_6631 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30730647-30731414 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30805338-30806023 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30815051-30815718 Neighboring gene MPRA-validated peak152 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30885131-30885632 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30885633-30886132 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:31000145-31001344 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_6672 Neighboring gene MPRA-validated peak154 silencer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_6678 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:31090817-31092016 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31114430-31114930 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:31122410-31123100 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31134880-31135811 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31136257-31136758 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 614 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31180709-31181209 Neighboring gene uncharacterized LOC124903888 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 558 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 559 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 615 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:31191909-31192484 Neighboring gene MATN1 antisense RNA 1 Neighboring gene matrilin 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      30253430..30261188
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_947130.3 RNA Sequence

    2. XR_947129.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      30096712..30104463
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007071283.1 RNA Sequence

    2. XR_007071284.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases