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    LOC105377783 uncharacterized LOC105377783 [ Homo sapiens (human) ]

    Gene ID: 105377783, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105377783
    Gene description
    uncharacterized LOC105377783
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    8p23.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (2251339..2253922)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (2027583..2038407)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377781 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:2128908-2129408 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:2130059-2130239 Neighboring gene uncharacterized LOC105377782 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:2177015-2177515 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:2198229-2199013 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:2199014-2199799 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:2204711-2204884 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:2206168-2207367 duplicate 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:2212147-2212701 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:2224809-2224986 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:2230117-2230734 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr8:2231642-2232172 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:2244841-2245340 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:2282596-2283334 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:2283335-2284073 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:2206168-2207367 duplicate 2 Neighboring gene uncharacterized LOC105377784 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:2362643-2363842 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:2382994-2383722 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:2383723-2384449 Neighboring gene long intergenic non-protein coding RNA 3021 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:2419495-2420034 Neighboring gene uncharacterized LOC107986865

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      2251339..2253922
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_941358.3 RNA Sequence

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187576.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      427087..434322
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001756315.2 RNA Sequence

    2. XR_001756317.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      2027583..2038407
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007078623.1 RNA Sequence

    2. XR_007078624.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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