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    LOC112268175 uncharacterized LOC112268175 [ Homo sapiens (human) ]

    Gene ID: 112268175, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC112268175
    Gene description
    uncharacterized LOC112268175
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC112268175 in Genome Data Viewer
    Location:
    16p12.2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (22577464..22608063, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (22855257..22885862, complement)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371131 Neighboring gene nuclear pore complex interacting protein family member B5 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:22585646-22585849 Neighboring gene OTOA pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:22593503-22594003 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:22635639-22636161 Neighboring gene long intergenic non-protein coding RNA 2890 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:22646396-22646952 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:22646953-22647508 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10574 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:22692364-22693148 Neighboring gene collagen alpha-1(XVI) chain Neighboring gene heparan sulfate-glucosamine 3-sulfotransferase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      22577464..22608063 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_002957911.2 RNA Sequence

    2. XR_002957910.2 RNA Sequence

    3. XR_002957912.2 RNA Sequence

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_017852933.1 Reference GRCh38.p14 PATCHES

      Range
      1743671..1774285 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_002959092.2 RNA Sequence

    2. XR_002959091.2 RNA Sequence

    3. XR_002959093.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      22855257..22885862 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007086981.1 RNA Sequence

    2. XR_007086980.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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