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    LINC01982 long intergenic non-protein coding RNA 1982 [ Homo sapiens (human) ]

    Gene ID: 105371830, updated on 10-Oct-2023

    Summary

    Official Symbol
    LINC01982provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1982provided by HGNC
    Primary source
    HGNC:HGNC:52812
    See related
    Ensembl:ENSG00000263317 AllianceGenome:HGNC:52812
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    Location:
    17q22
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (52390522..52535701)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (53258235..53403419)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (50467882..50613061)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene carbonic anhydrase 10 Neighboring gene carbonic anhydrase 10 repeat instability region Neighboring gene MPRA-validated peak2891 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:50104733-50105932 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:50133703-50133855 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr17:50197634-50198833 Neighboring gene Sharpr-MPRA regulatory region 175 Neighboring gene uncharacterized LOC105371829 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:50486474-50487018 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:50487019-50487562 Neighboring gene NANOG hESC enhancer GRCh37_chr17:50528526-50529375 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:50750682-50751881 Neighboring gene uncharacterized LOC107984983 Neighboring gene long intergenic non-protein coding RNA 2089

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_146898.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC009222, AC087714
      Related
      ENST00000572848.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      52390522..52535701
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_017363818.1 Reference GRCh38.p14 PATCHES

      Range
      98356..101525
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      53258235..53403419
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)