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    LOC105379110 uncharacterized LOC105379110 [ Homo sapiens (human) ]

    Gene ID: 105379110, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105379110
    Gene description
    uncharacterized LOC105379110
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    5q21.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (105243148..105392970, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (105747336..105897769, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_80715 Neighboring gene RNA, U6 small nuclear 334, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:104287201-104287702 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:104287703-104288202 Neighboring gene RAB9B, member RAS oncogene family pseudogene 1 Neighboring gene MPRA-validated peak5386 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:104727399-104728228 Neighboring gene MPRA-validated peak5387 silencer Neighboring gene Sharpr-MPRA regulatory region 1662 Neighboring gene NANOG hESC enhancer GRCh37_chr5:105275636-105276417 Neighboring gene RNA, 5S ribosomal pseudogene 189 Neighboring gene MPRA-validated peak5393 silencer Neighboring gene MPRA-validated peak5394 silencer Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:105590357-105590959 Neighboring gene RUN and FYVE domain containing 3 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      105243148..105392970 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_948650.3 RNA Sequence

    2. XR_948649.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      105747336..105897769 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007076325.1 RNA Sequence

    2. XR_007076324.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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