U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from dbVar

    • Showing Current items.

    MIR5007 microRNA 5007 [ Homo sapiens (human) ]

    Gene ID: 100846996, updated on 10-Oct-2023

    Summary

    Official Symbol
    MIR5007provided by HGNC
    Official Full Name
    microRNA 5007provided by HGNC
    Primary source
    HGNC:HGNC:43468
    See related
    Ensembl:ENSG00000264387 miRBase:MI0017874; AllianceGenome:HGNC:43468
    Gene type
    ncRNA
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    13q21.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (55174454..55174548)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (54390683..54390777)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (55748589..55748683)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370213 Neighboring gene uncharacterized LOC124903233 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:55519922-55520785 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:55574112-55574648 Neighboring gene long intergenic non-protein coding RNA 2335 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:56010133-56010881 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:56011216-56011793 Neighboring gene Sharpr-MPRA regulatory region 1645 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:56150333-56150862 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:56151393-56151922 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:56152453-56152982 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:56157753-56158282 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:56177964-56178464 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:56227375-56228088 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:56228945-56229842 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:56230739-56231635 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:56234325-56235221 Neighboring gene Sharpr-MPRA regulatory region 559 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:56538365-56538865 Neighboring gene hepatocyte nuclear factor 4 gamma pseudogene 1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:56685906-56686739 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:56686740-56687572 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:56688674-56689498 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:56689499-56690322 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:56740943-56741542 Neighboring gene spermatogenesis associated 2 pseudogene 1

    Genomic regions, transcripts, and products

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association study meta-analysis reveals transethnic replication of mean arterial and pulse pressure loci.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_049804.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AL357337
      Related
      ENST00000583098.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      55174454..55174548
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      54390683..54390777
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)