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    LOC105379102 uncharacterized LOC105379102 [ Homo sapiens (human) ]

    Gene ID: 105379102, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105379102
    Gene description
    uncharacterized LOC105379102
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    5q21.1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (101525583..101854335, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (102033717..102362470, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22851 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22852 Neighboring gene uncharacterized LOC107986437 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:100516072-100516644 Neighboring gene uncharacterized LOC107986438 Neighboring gene NANOG hESC enhancer GRCh37_chr5:100650831-100651418 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:100666245-100666746 Neighboring gene general transcription factor IIIA pseudogene 4 Neighboring gene RNA, 7SL, cytoplasmic 802, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:100994577-100995077 Neighboring gene NANOG hESC enhancer GRCh37_chr5:101054370-101054962 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:101118310-101119062 Neighboring gene olfactory receptor family 7 subfamily H member 2 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:101467333-101467904 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:101517472-101518671 Neighboring gene RNA, 5S ribosomal pseudogene 188 Neighboring gene MPRA-validated peak5379 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22853 Neighboring gene solute carrier organic anion transporter family member 4C1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      101525583..101854335 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007058891.1 RNA Sequence

    2. XR_948628.3 RNA Sequence

    3. XR_001742829.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      102033717..102362470 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007075845.1 RNA Sequence

    2. XR_007075846.1 RNA Sequence

    3. XR_007075847.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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