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    LOC105377865 uncharacterized LOC105377865 [ Homo sapiens (human) ]

    Gene ID: 105377865, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105377865
    Gene description
    uncharacterized LOC105377865
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in kidney (RPKM 4.3), thyroid (RPKM 3.6) and 5 other tissues See more
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    Genomic context

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    Location:
    6q14.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (77925881..78300821, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (79103261..79478245, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377864 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:78172074-78172218 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24763 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24764 Neighboring gene uncharacterized LOC124901493 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_95327 Neighboring gene 5-hydroxytryptamine receptor 1B Neighboring gene ribosomal protein S6 pseudogene 7 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17344 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:78425972-78426700 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:78426701-78427427 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:78427428-78428155 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:78435339-78436048 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:78436049-78436759 Neighboring gene meiotic double-stranded break formation protein 4 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_95486 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_95584 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_95703 Neighboring gene NANOG hESC enhancer GRCh37_chr6:78803625-78804263 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_95763 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_95771 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_95804 Neighboring gene NANOG hESC enhancer GRCh37_chr6:78901647-78902148 Neighboring gene Neanderthal introgressed variant-containing enhancers experimental_95852 and experimental_95858 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_95876 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_95967 Neighboring gene MPRA-validated peak5909 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr6:79289792-79290318 Neighboring gene microRNA 10524 Neighboring gene uncharacterized LOC107986613 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:79568400-79568966 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24765

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      77925881..78300821 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_002956359.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      79103261..79478245 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007076914.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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