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    LOC105370847 uncharacterized LOC105370847 [ Homo sapiens (human) ]

    Gene ID: 105370847, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105370847
    Gene description
    uncharacterized LOC105370847
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105370847 in Genome Data Viewer
    Location:
    15q22.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (61404091..61411468)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (59207511..59214881)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene RAR related orphan receptor A Neighboring gene uncharacterized LOC107984805 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6501 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:61438991-61439492 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:61465732-61466232 Neighboring gene uncharacterized LOC105370841 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr15:61656438-61657212 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr15:61657213-61657987 Neighboring gene MPRA-validated peak2363 silencer Neighboring gene uncharacterized LOC107984782 Neighboring gene NANOG hESC enhancer GRCh37_chr15:61829371-61829872 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr15:61848165-61849364 Neighboring gene uncharacterized LOC101928850 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:61932853-61933481 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr15:61973031-61973632 Neighboring gene uncharacterized LOC107984783

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      61404091..61411468
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_932332.2 RNA Sequence

    2. XR_932333.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      59207511..59214881
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007085602.1 RNA Sequence

    2. XR_007085603.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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