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    LINC02161 long intergenic non-protein coding RNA 2161 [ Homo sapiens (human) ]

    Gene ID: 105379076, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC02161provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2161provided by HGNC
    Primary source
    HGNC:HGNC:53022
    See related
    AllianceGenome:HGNC:53022
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02161 in Genome Data Viewer
    Location:
    5q14.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (89581217..89794279)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (90061594..90274681)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene MEF2C antisense RNA 1 Neighboring gene uncharacterized LOC105379073 Neighboring gene uncharacterized LOC107986387 Neighboring gene MPRA-validated peak5340 silencer Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:88998238-88999188 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16166 Neighboring gene MPRA-validated peak5343 silencer Neighboring gene MPRA-validated peak5344 silencer Neighboring gene uncharacterized LOC124901184 Neighboring gene uncharacterized LOC102724637

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      89581217..89794279
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_948556.3 RNA Sequence

    2. XR_948557.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      90061594..90274681
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007075774.1 RNA Sequence

    2. XR_007075773.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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