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    LOC107986262 uncharacterized LOC107986262 [ Homo sapiens (human) ]

    Gene ID: 107986262, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC107986262
    Gene description
    uncharacterized LOC107986262
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    4p15.31
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (18167665..18226765)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (18150018..18209119)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene ligand dependent nuclear receptor corepressor like Neighboring gene keratin 18 pseudogene 63 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15313 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15314 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21357 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21358 Neighboring gene uncharacterized LOC107986220 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:18160933-18161439 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21359 Neighboring gene uncharacterized LOC105374510 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:18631748-18632248 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:18693291-18694224 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21360 Neighboring gene uncharacterized LOC107986263 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21361 Neighboring gene NANOG hESC enhancer GRCh37_chr4:19012316-19012830

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      18167665..18226765
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001741598.1 RNA Sequence

    2. XR_001741599.2 RNA Sequence

    3. XR_001741600.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      18150018..18209119
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007074510.1 RNA Sequence

    2. XR_007074511.1 RNA Sequence

    3. XR_007074512.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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