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    LOC105373456 uncharacterized LOC105373456 [ Homo sapiens (human) ]

    Gene ID: 105373456, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105373456
    Gene description
    uncharacterized LOC105373456
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 3.8), stomach (RPKM 0.5) and 7 other tissues See more
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    Genomic context

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    See LOC105373456 in Genome Data Viewer
    Location:
    2p24.2-p24.1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (18560176..19089356)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (18592716..19122130)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373451 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:18513234-18513870 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11195 Neighboring gene uncharacterized LOC105373454 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:18633458-18633722 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:18637372-18637948 Neighboring gene MPRA-validated peak3612 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr2:18727890-18728410 Neighboring gene Sharpr-MPRA regulatory region 12735 Neighboring gene NT5C1B-RDH14 readthrough Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15357 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11196 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15358 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15359 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15360 Neighboring gene RNA, U6 small nuclear 1215, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:18821105-18821605 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:18820604-18821104 Neighboring gene Sharpr-MPRA regulatory region 8729 Neighboring gene 5'-nucleotidase, cytosolic IB Neighboring gene retinol dehydrogenase 14 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:18845994-18847193 Neighboring gene NANOG hESC enhancer GRCh37_chr2:18958528-18959297 Neighboring gene long intergenic non-protein coding RNA 1376 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:19258635-19259136 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:19259137-19259636 Neighboring gene uncharacterized LOC124907739 Neighboring gene Sharpr-MPRA regulatory region 11737 Neighboring gene uncharacterized LOC124907738 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:19384517-19385018 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:19385019-19385518 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:19404229-19404728 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:19428093-19429292 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:19505267-19505860 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:19505861-19506454 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15361 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15362 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15363 Neighboring gene microRNA 4757 Neighboring gene odd-skipped related transcription factor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      18560176..19089356
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007086234.1 RNA Sequence

    2. XR_001739304.3 RNA Sequence

    3. XR_007086229.1 RNA Sequence

    4. XR_007086231.1 RNA Sequence

    5. XR_007086230.1 RNA Sequence

    6. XR_427002.4 RNA Sequence

    7. XR_001739313.2 RNA Sequence

    8. XR_007086227.1 RNA Sequence

    9. XR_001739311.2 RNA Sequence

    10. XR_007086228.1 RNA Sequence

    11. XR_007086232.1 RNA Sequence

    12. XR_939776.3 RNA Sequence

    13. XR_007086233.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      18592716..19122130
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007071850.1 RNA Sequence

    2. XR_007071839.1 RNA Sequence

    3. XR_007071847.1 RNA Sequence

    4. XR_007071841.1 RNA Sequence

    5. XR_007071844.1 RNA Sequence

    6. XR_007071842.1 RNA Sequence

    7. XR_007071843.1 RNA Sequence

    8. XR_007071845.1 RNA Sequence

    9. XR_007071838.1 RNA Sequence

    10. XR_007071846.1 RNA Sequence

    11. XR_007071840.1 RNA Sequence

    12. XR_007071848.1 RNA Sequence

    13. XR_007071849.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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