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    LOC105377729 uncharacterized LOC105377729 [ Homo sapiens (human) ]

    Gene ID: 105377729, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105377729
    Gene description
    uncharacterized LOC105377729
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105377729 in Genome Data Viewer
    Location:
    5q35.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (172605916..172616842, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (173146078..173157007, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377727 Neighboring gene uncharacterized LOC107984004 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23638 Neighboring gene Sharpr-MPRA regulatory region 3838 Neighboring gene long intergenic non-protein coding RNA 1944 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:172002783-172003530 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:172011659-172012159 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:172022507-172023006 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:172023946-172024868 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:172029510-172030088 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:172043624-172044540 Neighboring gene uncharacterized LOC107986478 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:172049085-172049770 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:172053253-172053907 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:172057552-172058052 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16623 Neighboring gene neuralized E3 ubiquitin protein ligase 1B Neighboring gene translation machinery associated 7 homolog (S. cerevisiae) pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      172605916..172616842 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_941229.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      173146078..173157007 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007076131.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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