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    LOC105373592 uncharacterized LOC105373592 [ Homo sapiens (human) ]

    Gene ID: 105373592, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105373592
    Gene description
    uncharacterized LOC105373592
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105373592 in Genome Data Viewer
    Location:
    2q14.3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (121902453..122432938)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (122337514..122868383)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373590 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:122547721-122548382 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16473 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:122568941-122569442 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:122571203-122571771 Neighboring gene long intergenic non-protein coding RNA 1823 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11924 Neighboring gene VISTA enhancer hs2321 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:122733633-122734140 Neighboring gene Sharpr-MPRA regulatory region 14931 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:122766746-122767301 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:122767302-122767856 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:122775524-122776082 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:122785406-122786605 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:122801540-122802040 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11925 Neighboring gene MPRA-validated peak3841 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr2:122963157-122963658 Neighboring gene MPRA-validated peak3842 silencer Neighboring gene uncharacterized LOC105373591 Neighboring gene MPRA-validated peak3844 silencer Neighboring gene uncharacterized LOC105373593 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:123274025-123274951 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:123277360-123277860 Neighboring gene uncharacterized LOC107985943 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:123418771-123419429

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      121902453..122432938
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001739684.2 RNA Sequence

    2. XR_007087222.1 RNA Sequence

    3. XR_923281.3 RNA Sequence

    4. XR_001739685.2 RNA Sequence

    5. XR_923280.3 RNA Sequence

    6. XR_923282.3 RNA Sequence

    7. XR_923283.3 RNA Sequence

    8. XR_923284.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      122337514..122868383
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007072454.1 RNA Sequence

    2. XR_007072449.1 RNA Sequence

    3. XR_007072451.1 RNA Sequence

    4. XR_007072450.1 RNA Sequence

    5. XR_007072455.1 RNA Sequence

    6. XR_007072456.1 RNA Sequence

    7. XR_007072452.1 RNA Sequence

    8. XR_007072453.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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