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    LOC107985465 uncharacterized LOC107985465 [ Homo sapiens (human) ]

    Gene ID: 107985465, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC107985465
    Gene description
    uncharacterized LOC107985465
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC107985465 in Genome Data Viewer
    Location:
    1q42.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (234564593..234570341, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (233954990..233960743, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene TAR (HIV-1) RNA binding protein 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1969 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1970 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1971 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1972 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2752 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2753 Neighboring gene Sharpr-MPRA regulatory region 12347 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2754 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2755 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2756 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234657990-234658756 Neighboring gene Sharpr-MPRA regulatory region 10256 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2759 Neighboring gene Sharpr-MPRA regulatory region 14716 Neighboring gene long intergenic non-protein coding RNA 1354 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234675813-234676316 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:234677690-234678190 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:234678191-234678691 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:234689060-234689267 Neighboring gene Sharpr-MPRA regulatory region 4208 Neighboring gene NFE2L2 motif-containing MPRA enhancer 72 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:234724436-234724936 Neighboring gene U8 small nucleolar RNA Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:234735097-234735610 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:234735611-234736124 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1974 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1975 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2760 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1976 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1977 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1978 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234745399-234746096 Neighboring gene interferon regulatory factor 2 binding protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      234564593..234570341 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001737831.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      233954990..233960743 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007071204.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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