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    LOC105373628 uncharacterized LOC105373628 [ Homo sapiens (human) ]

    Gene ID: 105373628, updated on 17-Jun-2024

    Summary

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    Gene symbol
    LOC105373628
    Gene description
    uncharacterized LOC105373628
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in thyroid (RPKM 2.1) and testis (RPKM 0.1) See more
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    Genomic context

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    See LOC105373628 in Genome Data Viewer
    Location:
    2q21.2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (133986217..134031286, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (134425726..134470781, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene NCK associated protein 5 Neighboring gene NANOG hESC enhancer GRCh37_chr2:134401501-134402008 Neighboring gene RN7SK pseudogene 93 Neighboring gene Sharpr-MPRA regulatory region 15675 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:134575595-134576794 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16541 Neighboring gene uncharacterized LOC105373627 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16542 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:134742538-134743737 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16543 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:134821977-134822608 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16544 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:134864951-134865484 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:134866541-134867202 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:134867203-134867862 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11975 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11974 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11972 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11971 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11973 Neighboring gene NANOG hESC enhancer GRCh37_chr2:134891163-134891785 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:134891786-134892407 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_52669 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16545 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:134915432-134916037 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:134916038-134916642 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16546 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_52692 Neighboring gene NANOG hESC enhancer GRCh37_chr2:134960700-134961201 Neighboring gene Sharpr-MPRA regulatory region 5769 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11976 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16547 Neighboring gene microRNA 3679 Neighboring gene alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase Neighboring gene RNA, 5S ribosomal pseudogene 104

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      133986217..134031286 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001739715.2 RNA Sequence

    2. XR_923353.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      134425726..134470781 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007071655.1 RNA Sequence

    2. XR_007071656.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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