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    LOC105371829 uncharacterized LOC105371829 [ Homo sapiens (human) ]

    Gene ID: 105371829, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105371829
    Gene description
    uncharacterized LOC105371829
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    17q22
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (52231570..52236948)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (53099271..53104661)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene ribosomal protein L7 pseudogene 48 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:49675964-49676711 Neighboring gene carbonic anhydrase 10 Neighboring gene carbonic anhydrase 10 repeat instability region Neighboring gene MPRA-validated peak2891 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:50104733-50105932 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:50133703-50133855 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr17:50197634-50198833 Neighboring gene Sharpr-MPRA regulatory region 175 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:50486474-50487018 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:50487019-50487562 Neighboring gene long intergenic non-protein coding RNA 1982 Neighboring gene NANOG hESC enhancer GRCh37_chr17:50528526-50529375 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:50750682-50751881 Neighboring gene long intergenic non-protein coding RNA 2089

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      52231570..52236948
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_934859.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      53099271..53104661
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007087688.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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