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    LOC112267962 uncharacterized LOC112267962 [ Homo sapiens (human) ]

    Gene ID: 112267962, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC112267962
    Gene description
    uncharacterized LOC112267962
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    Location:
    6q14.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (80484976..80647480)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (81693331..81855982)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene branched chain keto acid dehydrogenase E1 subunit beta Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:81148056-81149255 Neighboring gene ribosomal protein L17 pseudogene 25 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:81193272-81193889 Neighboring gene NANOG hESC enhancer GRCh37_chr6:81225104-81225623 Neighboring gene Sharpr-MPRA regulatory region 6183 Neighboring gene uncharacterized LOC105377869 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:81245601-81246800 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:81257567-81258766 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:81282770-81283340 Neighboring gene ribosomal protein SA pseudogene 72 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:81283341-81283911 Neighboring gene citrate synthase, mitochondrial-like Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:81683862-81684593 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:81914442-81915070 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:81973001-81973895 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_96007 Neighboring gene uncharacterized LOC105377871 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:82161082-82162281 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:82299236-82299424 Neighboring gene RNA, 5S ribosomal pseudogene 210

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      80484976..80647480
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_002956360.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      81693331..81855982
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007076926.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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