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    LOC105371308 uncharacterized LOC105371308 [ Homo sapiens (human) ]

    Gene ID: 105371308, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105371308
    Gene description
    uncharacterized LOC105371308
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    16q21
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (63105711..63618046, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (68893618..69406077, complement)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723560 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr16:62887250-62888449 Neighboring gene DPPA3 pseudogene 11 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10936 Neighboring gene Sharpr-MPRA regulatory region 101 Neighboring gene uncharacterized LOC105371307 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:63154211-63154710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:63153709-63154210 Neighboring gene UBE2F pseudogene 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:63422293-63422896 Neighboring gene ribosomal protein S15a pseudogene 34 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:63547840-63547987 Neighboring gene NANOG hESC enhancer GRCh37_chr16:63685874-63686502 Neighboring gene MPRA-validated peak2614 silencer Neighboring gene long intergenic non-protein coding RNA 2165 Neighboring gene uncharacterized LOC105371309

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      63105711..63618046 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001752232.2 RNA Sequence

    2. XR_007065221.1 RNA Sequence

    3. XR_007065220.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      68893618..69406077 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007086550.1 RNA Sequence

    2. XR_007086551.1 RNA Sequence

    3. XR_007086549.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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